These Apple Cinnamon Vegan Muffins are the perfect blend of cozy spices, fresh apples, and wholesome ingredients. Whether you’re looking for a healthy snack for kids, a quick breakfast, or a fall treat, these muffins have got you covered.

Apple cinnamon vegan muffin with a bite out of it.

These Apple Muffins are moist, lightly sweetened with maple syrup and fresh apples, and are completely dairy and egg-free, thanks to the magic of chia seeds as an egg substitute.

If you love the comforting aroma of baked apples and cinnamon filling your kitchen, this is the recipe for you!

I love packing these muffins in my kids’ lunchboxes! My kids also love when I pack these Applesauce Muffins, Banana Carrot Muffins, or Blender Blueberry Muffins.

Recipe Ingredients

You’ll need the following ingredients to make these Vegan Apple Muffins:

Ingredients for the muffins.

Ingredient Notes

  •  Chia Seeds: These act as the egg replacer in this vegan recipe. Mixing chia seeds with water creates a gel-like consistency perfect for binding the muffins.
  • Apples: Any variety works, but I recommend sweeter apples like Fuji, Gala, or Honeycrisp. Shred them finely to ensure they blend well into the batter. I leave the peel on my apples, but feel free to peel your apples first if preferred.
  • Olive Oil: Adds moisture and a subtle richness and olive oil flavor. I love the olive oil flavor, but feel free to substitute with a more neutral oil like avocado or coconut oil if you prefer.
  • Maple Syrup: Naturally sweetens the muffins. You can adjust the sweetness to your taste or swap with a different sweetener like honey or agave.

Additions & Substitutions

Additions:

  • Nuts: Fold in ¼ cup of chopped walnuts or pecans for added crunch.
  • Dried Fruit: Add ¼ cup of raisins or dried cranberries for a pop of sweetness. I always check that my dried fruit, like cranberries, has no added sugar (oftentimes, there is added sugar in dried fruit so I encourage you to check your labels!)
  • Spices: If you love warm spices, add a pinch of ground ginger or cloves for more depth.

Substitutions:

  • Olive Oil: Substitute with melted coconut oil or vegetable oil if you prefer a different flavor profile.
  • Maple Syrup: Swap with honey, agave syrup, date syrup for a similar natural sweetness.
  • Almond Milk: Use any plant-based milk you have on hand, such as oat, soy, or coconut milk.

Tools For This Recipe

How to Make Apple Cinnamon Vegan Muffins: Step-by-Step

For the full recipe with the exact ingredients, scroll down to the printable recipe card below!

Chia egg.

Step 1: Make the chia eggs by combining chia seeds and water. Set aside until it forms a gel-like consistency, about 5 minutes.

Dry ingredients mixed in a bowl.

Step 2: In a large bowl, combine flour, whole wheat flour, baking powder, baking soda, cinnamon, and nutmeg.

Wet ingredients mixed together.

Step 3: Then, in a medium bowl, combine vanilla, maple syrup, shredded apples, olive oil, soy milk, and chia eggs.

Wet and dry ingredients mixed together.

Step 4: Pour the wet ingredients into the dry ingredients and stir to combine, careful not to overmix.

Cooked muffins in a muffin pan.

Step 5: Using a ¼ cup measuring cup, scoop the muffin batter into the muffin liners, filling each one a little below the brim. Bake in the oven for 5 minutes at 425 degrees Fahrenheit. Then, turn down the heat to 350 degrees and continue baking for approximately 15 minutes or until a toothpick comes out mostly clean when inserted in the middle of a muffin.

Recipe Tips & Tricks

  • Double the Batch: These muffins freeze well! Make a double batch and freeze half for a quick grab-and-go snack or breakfast.
  • Grate Ahead: Shred your apples in advance and store them in an airtight container in the fridge for up to 24 hours. Don’t worry about them turning brown – this won’t matter when you bake your muffins!
  • Add Toppings: Before baking, sprinkle the tops with rolled oats or chopped nuts for extra texture, nutrients, and visual appeal. 
A bowl of apple cinnamon muffins.

Storage & Reheating

  • Fridge: Store these muffins in an airtight container in the fridge for up to 3-4 days. I love warming mine up and adding butter (use vegan butter to keep the recipe vegan) or nut butter.
  • Freezer: Freeze the muffins in a single layer in a freezer-safe container for up to 3 months. To reheat, thaw at room temperature or microwave for 20-30 seconds.

Frequently Asked Questions

Can I make these muffins gluten-free?

Yes! Use a 1:1 gluten-free baking flour blend in place of the all-purpose and whole wheat flour.

How should I store these muffins?

Store them in an airtight container at room temperature for up to 2 days or in the fridge for about 3-4 days. For longer storage, freeze them for up to 3 months.

Can I use flaxseed instead of chia seeds?

Absolutely! Replace the chia seeds with flaxseed meal using the same ratio (2 tablespoons flaxseed + 5 tablespoons water).

Can I make these muffins nut-free?

Yes! Replace the almond milk with soy milk or any nut-free milk alternative.

Apple muffin on a plate next to a bowl of muffins.
Kaileigh Gaffney from Supermom Eats.

Did you try this recipe?

Let me know how you liked it by leaving a comment and rating below! Or tag me on Instagram and share what you made!

Apple cinnamon vegan muffin with a bite out of it.
5 stars (2 ratings)

Apple Cinnamon Vegan Muffins

Yield: 12 muffins
These Vegan Apple Cinnamon Muffins are refined sugar-free, filled with fiber, and have all the Fall feels. They make a perfect school snack!
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 30 minutes

Ingredients
 

  • 2 tablespoons chia seeds
  • 5 tablespoons water
  • 1 ¼ cups all-purpose flour
  • ½ cup whole wheat flour
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • 1 ½ teaspoons cinnamon
  • ¼ teaspoon nutmeg
  • 2 teaspoons vanilla extract
  • cup maple syrup
  • 2 apples, shredded* (any variety, no need to peel them first)
  • ½ cup olive oil, or a more neutral oil if you don't like a subtle olive oil flavor
  • ¼ cup almond milk, (plain and unsweetened; you can use any preferred plant-based milk or regular milk)

Instructions
 

  • Preheat the oven to 425 degrees Fahrenheit. Line a muffin tin with non-stick muffin liners and set aside.
  • Make the chia eggs by combining chia seeds and water. Set aside until it forms a gel-like consistency, about 5 minutes.
  • In a large bowl, combine flour, whole wheat flour, baking powder, baking soda, cinnamon, and nutmeg.
  • Then, in a medium bowl, combine vanilla, maple syrup, shredded apples, olive oil, almond milk, and chia eggs.
  • Pour the wet ingredients into the dry ingredients and stir to combine, careful not to overmix.
  • Using a ¼ cup measuring cup or cookie scoop, scoop the muffin batter into the muffin liners, filling each one a little below the brim.
  • Bake in the oven for 5 minutes. Then, turn down the heat to 350 degrees and continue baking for approximately 15 minutes or until a toothpick comes out mostly clean when inserted in the middle of a muffin.

Notes

*You don’t need to peel the skin off of the apples before shredding. I just shred them with the skin on! You can peel them first if you’d like to though.
Course: Snack
Cuisine: American
Calories: 197kcal, Carbohydrates: 25g, Protein: 2g, Fat: 10g, Saturated Fat: 1g, Polyunsaturated Fat: 2g, Monounsaturated Fat: 7g, Trans Fat: 0.003g, Sodium: 90mg, Potassium: 95mg, Fiber: 2g, Sugar: 9g, Vitamin A: 19IU, Vitamin C: 1mg, Calcium: 57mg, Iron: 1mg
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